Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs1093398 chr9:98509344 A/G 2.58E-5 119 32.7 44.5 43.27 KM Plot
THYM rs10937717 chr4:6295087 T/A 3.51E-6 118 25.83 40.78 50.07 KM Plot
THYM rs10937718 chr4:6295217 T/C 1.43E-6 118 25.83 38.58 50.1 KM Plot
THYM rs10937720 chr4:6295451 A/G 1.43E-6 118 25.83 38.58 50.1 KM Plot
THYM rs10951814 chr7:45301087 C/T 2.38E-5 119 49.83 35.67 14.9 KM Plot
THYM rs10951816 chr7:45311897 A/G 2.43E-5 118 50.07 35.13 14.9 KM Plot
THYM rs10952935 chr7:76139395 C/T 0.000249 119 40.67 45.87 28.43 KM Plot
THYM rs10952936 chr7:76139453 C/T 0.000249 119 40.67 45.87 28.43 KM Plot
THYM rs10981787 chr9:98516889 A/G 1.57E-5 119 38.32 42.73 39.75 KM Plot
THYM rs10981895 chr9:98519783 A/G 3.35E-9 119 34.87 42.73 40.67 KM Plot
THYM rs10981907 chr9:98520083 G/A 8.15E-9 115 38.83 46.27 34.87 KM Plot
THYM rs10981996 chr9:98521644 C/A 9.0E-9 115 38.83 42.73 34.87 KM Plot
THYM rs10982065 chr9:98523740 C/A 9.0E-9 115 38.83 42.73 34.87 KM Plot
THYM rs10993191 chr9:97180199 C/T 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs10993194 chr9:97195313 T/C 7.78E-5 119 41.77 40.43 17.03 KM Plot